Scaffold Ga0213865_10024492

Overview

Basic Information

• Taxon OID: 3300021373
• Scaffold ID: Ga0213865_10024492
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3401
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001942	Metagenome / Metatranscriptome	613	Y
F008595	Metagenome / Metatranscriptome	331	Y
F036651	Metagenome / Metatranscriptome	169	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213865_1002449210	F036651	AGGA	MREITLNEVGKTKPLILAKRQIRGYYRDVFTGENKVQVDDKEYIVRDSLTEISYLMGVNR
Ga0213865_100244924	F008595	AGGAG	MSKEENKMQQEENPVIITYNDVEYRATDLNEEQMALAAKLNVAGRKLNRLQEAYDDYVITNEYKNICIESFDRAIKAEDEEVEVVEEE
Ga0213865_100244928	F001942	N/A	MPRKTSDQHQANSRLGALGESLVQTFLLEYADFCYPTQEKHPADLLMEVSGGKYTVQVKSRRATKEKKFVFAAENSRSMSETYKNYRCDILAFVFFYNDEKRIMFKANTSSQNYFTFDKKIITDNMELDSLQETLDALNSVPVLNSII