NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213865_10016681

Scaffold Ga0213865_10016681


Overview

Basic Information
Taxon OID3300021373 Open in IMG/M
Scaffold IDGa0213865_10016681 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4166
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (71.43%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002221Metagenome581Y
F008346Metagenome335Y
F024204Metagenome207N
F094536Metagenome106N
F099546Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0213865_100166811F002221N/AKLKQLRVYEAETKVKWGNFKRIYKMVGVDFEIKFIKAEQLLKKSLQEDPPKKQIAMVEMMMRAYEQLNIKCEQSGYIMIQPNAKCFTFDKKTALICDTDDEKPTLELIHKDEEDIMIFSIEELLRCIPGDFMRAKELLSKLDKSVNIQRVDYV
Ga0213865_1001668112F024204AGGAGMSNYSYKEIVEEGIEVCASCGSANINFNKNNQDQSKPIEHCFNCDCAEGLATCMPNDLHFYQEAKETLNKLRGE
Ga0213865_100166813F008346N/AMPIKLKPSAKIRDRATGKLSIEHYYLKCMTVSELNDYIESPSAKKKVIQKCKNELVRRSK
Ga0213865_100166815F099546GAGMSNKPQIDVSQLKRQIDKGKSLNEVVMSLGRSKSTILKVANENGLKFNKKSPWANL
Ga0213865_100166816F094536AGGMRVTLKSNLKQLRKDLDKNLNKKDFNKIMARAMNYTGEKIVNAERSHLNDKLDRPRPQTVKSVVISQFAKGQSNKLAMTVRVKDWAAKYLHYIYSGEDEPARNRGYPSPTRDGLPKQGKFGNIVKLSKKGGLLSKIDKTADSQRKGSRFQGVPKGSGSKVYGIWERQGRKGREGLKLLVAYTPFIKHKKFIDFFKVGEMVIRNNLHRELNKQFLRHMKRR
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