Basic Information | |
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Taxon OID | 3300021373 Open in IMG/M |
Scaffold ID | Ga0213865_10016681 Open in IMG/M |
Source Dataset Name | Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4166 |
Total Scaffold Genes | 14 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (71.43%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: North Carolina | |||||||
Coordinates | Lat. (o) | 34.7181 | Long. (o) | -76.6707 | Alt. (m) | Depth (m) | 1 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F002221 | Metagenome | 581 | Y |
F008346 | Metagenome | 335 | Y |
F024204 | Metagenome | 207 | N |
F094536 | Metagenome | 106 | N |
F099546 | Metagenome | 103 | N |
Protein ID | Family | RBS | Sequence |
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Ga0213865_100166811 | F002221 | N/A | KLKQLRVYEAETKVKWGNFKRIYKMVGVDFEIKFIKAEQLLKKSLQEDPPKKQIAMVEMMMRAYEQLNIKCEQSGYIMIQPNAKCFTFDKKTALICDTDDEKPTLELIHKDEEDIMIFSIEELLRCIPGDFMRAKELLSKLDKSVNIQRVDYV |
Ga0213865_1001668112 | F024204 | AGGAG | MSNYSYKEIVEEGIEVCASCGSANINFNKNNQDQSKPIEHCFNCDCAEGLATCMPNDLHFYQEAKETLNKLRGE |
Ga0213865_100166813 | F008346 | N/A | MPIKLKPSAKIRDRATGKLSIEHYYLKCMTVSELNDYIESPSAKKKVIQKCKNELVRRSK |
Ga0213865_100166815 | F099546 | GAG | MSNKPQIDVSQLKRQIDKGKSLNEVVMSLGRSKSTILKVANENGLKFNKKSPWANL |
Ga0213865_100166816 | F094536 | AGG | MRVTLKSNLKQLRKDLDKNLNKKDFNKIMARAMNYTGEKIVNAERSHLNDKLDRPRPQTVKSVVISQFAKGQSNKLAMTVRVKDWAAKYLHYIYSGEDEPARNRGYPSPTRDGLPKQGKFGNIVKLSKKGGLLSKIDKTADSQRKGSRFQGVPKGSGSKVYGIWERQGRKGREGLKLLVAYTPFIKHKKFIDFFKVGEMVIRNNLHRELNKQFLRHMKRR |
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