Scaffold Ga0213865_10012196

Overview

Basic Information

• Taxon OID: 3300021373
• Scaffold ID: Ga0213865_10012196
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4932
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001523	Metagenome / Metatranscriptome	678	Y
F003364	Metagenome / Metatranscriptome	491	Y
F051057	Metagenome / Metatranscriptome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213865_100121961	F051057	N/A	VAEQQEQLDVLNLDVNDLWNFCTFTENKWAEAYVGDMVYERVCGTKEVVGE
Ga0213865_100121967	F001523	AGGA	MNTTTIAITTAAAMGLLTIMATKASSMDFSVAGQTLSIGADSDINYTTGVEDWEWELTPSAGITAMGIGLSVATDIDMLELDEGDIFQGLNFTAKYEIPSTYINLYTEVSTDADLEFGDVTVGATVSF
Ga0213865_100121968	F003364	N/A	MWIAFMLLCTGPSALTCEVMAKTEATFLTEEACAQEALVVARYFQSEGYLAIPQCKKINMGVSL