NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213865_10011770

Scaffold Ga0213865_10011770


Overview

Basic Information
Taxon OID3300021373 Open in IMG/M
Scaffold IDGa0213865_10011770 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5027
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F054354Metagenome140Y
F061272Metagenome / Metatranscriptome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0213865_100117707F061272GGAGGVDEIEVGSLVIFLEDFMSDTIPNVGIVLAIISFDQLVGEELGKGVTWYSVMFGEIDIVVSSEMIILLN
Ga0213865_100117708F054354GGAGGMNKFIDEGIKAGYEFIIIEPQEGYNEAIVGFDYGRLVYDTETLMNCMRKYHHWEYETAIEWFEYNTLSLTDMKGGPLFFEPEEEFYLTHEDKRVTLEVRNKIMEDK

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