Scaffold Ga0213865_10010669

Overview

Basic Information

• Taxon OID: 3300021373
• Scaffold ID: Ga0213865_10010669
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5295
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002221	Metagenome	581	Y
F008346	Metagenome	335	Y
F013639	Metagenome / Metatranscriptome	269	Y
F059861	Metagenome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213865_100106692	F013639	GAG	MKIDKQKLEKKIKEGKSSHDIAMTYDVHPSTIRRKAKALGLKFQTQSHWRKG
Ga0213865_100106694	F008346	GAGG	MPIKLKPSAKIRDRATGKTTTEHYYLKCMTLKELNDYIESSSSKKKVIQKCKNEIIRREK
Ga0213865_100106695	F059861	N/A	VNKFYNEDLPYGEAGEMFVLDIINRKHPMAYKMQGNFSEYDIMIPEIEKTVEVKRDKHTDRTGNVFIETYCNKVESGINISTADYWAYLTKSMLYWIKSFDLKLCILENEIPEGKNYMIDGKIIDAYLIPVDIFKTYCMRIDTLTEEQLCQ
Ga0213865_100106697	F002221	N/A	MTKPIKTYLDETLEQKLKELRTYELDTYVKWGNRKRIFKMVGVNFEIKFCRAEQMLKESLQNDTVQKKLKMVEMMIRAFEQLNIKCEESGYIQIQPNARCFNFDNKTALICDTDADKPVLEKIHKAEKDMVIFSVEELLRCLPKDFMQAKVLLSKLDKSVNFQKVNYV