NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213865_10009965

Scaffold Ga0213865_10009965


Overview

Basic Information
Taxon OID3300021373 Open in IMG/M
Scaffold IDGa0213865_10009965 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5494
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (25.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010128Metagenome / Metatranscriptome308Y
F015092Metagenome / Metatranscriptome257Y
F049552Metagenome / Metatranscriptome146Y
F069999Metagenome123Y
F074752Metagenome119Y
F082690Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0213865_1000996510F015092N/AMIDKIKSKLLTKLFMEWVSDEFDIETLEASKLMIQQRQDIVNSLTDQANPPEPIGFKY
Ga0213865_1000996512F082690AGCAGMSKECVMCGGDAGEYGNNPAPLYHEGVCCDECNMEVVSFRIMISQIQ
Ga0213865_1000996513F074752N/AMVLVETETTSISFDQEGDAYFMVGDVVYYLNEFMKVTDGEFDGVTHITNTGGIGIKIDEVNEEVEYSFFTN
Ga0213865_1000996516F049552N/AMKDKNKEFWNVIAAMDFNGRGHEFAGRWLVEDSGLTFSEIKEIRNTAARKVNVLYEKFRDDVRIGSDDGFDDVLWQTVANGYESFHNCTADSLTEMYDEMRYTESFAYAFHAVSEIEDEQFAANKFLKRERAMKRIEEMRKYGGGFDQKLIAAFEHADNNNKRKLAKGFPEIFEHLVD
Ga0213865_100099653F010128N/AMAKDNPTKPGGMRRFDELVAIRNVFGNDAVLLEELVRVMSNRDASYLFKRVAKSFDVTGALNKELDTINQRD
Ga0213865_100099655F069999N/AMSLLNELNPEVRKQLEADKEQYPYLYKSIMADLQSAQLSTDVKVSTAQQLISYAEVAKVEFESDNFILKLYNVFGK
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