Scaffold Ga0213865_10007590

Overview

Basic Information

• Taxon OID: 3300021373
• Scaffold ID: Ga0213865_10007590
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6330
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001521	Metagenome / Metatranscriptome	679	Y
F008134	Metagenome / Metatranscriptome	338	Y
F018089	Metagenome	237	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213865_100075901	F018089	AGGA	MTNTTQQTTFEVKTPEAKASYGMVRKIAQQFSKSPKCPKDIKWGTIHGHFVSRLNDKTKPLTQGQVAKILSMKALPSADLKAMRSYKKLVELG
Ga0213865_100075903	F001521	AGAAG	MKLWITEHVNEDGAAIGPYIKADTVAEANRIAIQYGLLVLGEIQELQHDTKVKERILH
Ga0213865_100075905	F008134	N/A	VQDIGHIKQSGSMSQIGSNEKPVLMSSKKNKGRLYGPSWHGGKGAAPRVNVHSKQYRDNWDLIFGKKGENNANKEEE