NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213865_10007317

Scaffold Ga0213865_10007317


Overview

Basic Information
Taxon OID3300021373 Open in IMG/M
Scaffold IDGa0213865_10007317 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6450
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036486Metagenome / Metatranscriptome170N
F068254Metagenome / Metatranscriptome125N
F069731Metagenome / Metatranscriptome123N

Sequences

Protein IDFamilyRBSSequence
Ga0213865_1000731711F068254N/AMPKLKTQHTSRLFYKRFKYKAVVQTPQTGFTRYATRKDIDALFSAEKLEQWQGVQGPLSYGYSNFTIGSIHDYKSQSRKRVWNNRFTLYKLFNWINEHYDTQQNTIRNEGDKLAFFTNDKAKWEDFCGTFKNEITELVWPKNDYHSQFFDKNPTTIVCKNLPYNKYRFKINLRGQVIRQEGFSEWIKNYDGDLKASGNLLKGIKRGYYYSDGKFLYSTNSEMMLLLQMYLGDSIRSIQEYITEAELDEQQTN
Ga0213865_100073176F036486AGGAGMARTKQYVVYTREFTKGNVNSKIGVFVEEANKYTVNGEVNGGAIKFANLKMSRPTATKKLVDAGYDFNVRVLGTSSLQGAMAMKEQLIDLLAETNKNVINVAA
Ga0213865_100073177F069731AGGAMKTLPIKDALNLAVQVYVKNGKYHREDQYEYVETDEGPSERITVKGNKYLMREMFQQDSVYIDPKCNDMVEDLYTHYQGLIFKVMSNTATDFSQNVYKVITKDEVTIRELGILAPLPSLYEAELQRIQFIEGIANSQWVGTIGEKQTVRATLHEARYIRSRDFYVYTFISEGDLITHFSQKAINQWATVGVLREGEEYTITFKVKRQGYSSFYDCKDTVVNYLKISD
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