Scaffold Ga0213865_10007229

Overview

Basic Information

• Taxon OID: 3300021373
• Scaffold ID: Ga0213865_10007229
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6500
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (13.33%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007366	Metagenome	352	N
F013089	Metagenome	274	N
F020174	Metagenome	225	Y
F023580	Metagenome	209	N
F030437	Metagenome / Metatranscriptome	185	N
F095418	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213865_100072291	F095418	N/A	MIHLNPNSADEQFIYLTLAEMKKDFAAFTNYLIILENMASTDNHAFIGDVEVDNARYTKISVYTNQPLGVSSRVLLTETGLYTYKAYGQNSTNNLNPTDASIVGLLEQGTLNVTGAIGYDIPDITIPDNYIYYQ
Ga0213865_1000722910	F020174	N/A	MDEIKEDVLKYWTWAQEEFKGEDIDRLRFEVDSAITNLNRHINNEFRRKAMGKTDMRSK
Ga0213865_1000722912	F013089	N/A	MGQSKIKTIQPNGTYDSQNGLMYKFEIQLESGDSGEVSAKSQDRWSVGDEVEFEVTPSKWGDRMKLTKPGFTPNQSKANNPDIQKRIDASWAIGHAIAQESDPEKILEAAEFLLSIRSTLISKL
Ga0213865_1000722914	F023580	N/A	MNNIKLFLIRNYGSTHNAAQTLDVTPNTVRNWCGRMPRNILKHLPEISETCGATYAEIVEEVLLCEREGME
Ga0213865_100072297	F007366	N/A	MRGTPLKETKLGQWFKTKAPKVFDLIGEIVPGADALKAIGALIDNTETSDEEKIKAKLLMEEIANADRANARNREIEITKSLGQRDWMQVFVGSAAMIIGIVMVVWAKTGVEDKEIFFHILGFAEGTLVGQVVNYYFGSAKN
Ga0213865_100072299	F030437	N/A	MSHRQEENWVTGKTHTRSASAYRTSIWTPVDEDDFYKNREKYIEAGWKSYCWTKGAEGYDKYFLSKLPKDEFEHLLMVEKKYGYFTLFFHMDED