Scaffold Ga0213865_10006965

Overview

Basic Information

• Taxon OID: 3300021373
• Scaffold ID: Ga0213865_10006965
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6621
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020172	Metagenome / Metatranscriptome	225	N
F064767	Metagenome / Metatranscriptome	128	N
F095283	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213865_1000696510	F064767	N/A	MQLFHQYQSLSGELSMGIDEYVIAVRAADSMSKAWRSDVAILSNLKIVRLENARGTILEIVRWDL
Ga0213865_1000696513	F020172	N/A	MFCTRNGYKHIENLDTVCELIGRLKGLTESEYLDLCAINKLENARALEMAKHYPSH
Ga0213865_100069658	F095283	N/A	MRQEGLRDFLSKQKLIEKVIDISDKLTDPDKEYDALDVQRMRTAAELNLKLASKFLPDLKSTELTGPEGGDLVIAVQRKRFDGDD