Scaffold Ga0213865_10005174

Overview

Basic Information

• Taxon OID: 3300021373
• Scaffold ID: Ga0213865_10005174
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7743
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (72.22%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012117	Metagenome / Metatranscriptome	283	N
F019728	Metagenome	228	Y
F024204	Metagenome	207	N
F094536	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213865_100051741	F019728	AGGAG	MITKEELKKNGWTVVPNGVWFGVDYAESHKVNVLDVLTDLLDLDTDVEGYNFVVCAYKKEGGNDE
Ga0213865_1000517415	F012117	GGAG	MDILGGMSSSNEGQQVYLAFKTMQQQFFANGETPVEFQYLQLDPATFKSGWGRYTKAEGFEYHWDDKFGVVSPKPADDYKRAFSAWVFPQGAQHAYLWQRFTYAESSAFNNILGSFWNQMDSSSANLPVVKYEGSKPIQVGMGNSSELSFSFAKFAPRSAEFVIPSWYTDEEKPVEDTFKSPNDGLADKVQEMVEKNELSDDDIPF
Ga0213865_100051744	F024204	AGG	MMSNYSYQEIVEEGIEVCASCGSANINFNQNKQDKSKPIEHCFDCDYSEGIATCMPNDLHFYQEAKETFNKLQEVDNV
Ga0213865_100051748	F094536	AGG	MRITVKDNLKDVRKQLDKDLNKRDFNKIMARAMNYTGERVVNAERSHLNDKLDNPRPQTVQSVVISNFAKPKSNRLATRVIVKDWAVKFLHYIYTGENEPARRQKYASPTKDGEYKKGKYGNIMKLSAKGGLLGRVDKTKDSQRKGSRFQGIPKGEGSKTYGIWERQGRKGREGLKLLVAFTPFIKHRKFIDFYKVGEKVIKSTLHREINRQFARHLKR