Scaffold Ga0213865_10004829

Overview

Basic Information

• Taxon OID: 3300021373
• Scaffold ID: Ga0213865_10004829
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8044
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033250	Metagenome	178	N
F038464	Metagenome	166	N
F070658	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213865_100048292	F070658	GAG	VSVDLDIQLRSVERHLKRKHGERRVLTAGEYMVLLSGGQDVLIQLRQGWPVVTGRSRAGWDVQAIQRPFIGYRVSNGIDYSQYVHRSGEGPDPLWEQQMIIIRDRILPPIVERLNRTITETERYSQPVQQQQPQRSLFLATPQQQTVDLFSQVRRLRRLVRRR
Ga0213865_100048293	F033250	GGAGG	MDVNLSTVRQLSPVFEAGGTIDLEVLRPILEQHAASMVEDARTGWPVDTGISREAWQAEIDVSPTELFVSLINEARQRGRGYAVYVHRARSQRLVWTEVQERLTLNLIPALQADIALTLAESMRG
Ga0213865_100048295	F038464	AGGA	MKTITLSPLHDLQIRKPAEWTALVDLTVCWPTDPEDPRFRSRLVRCSAAAIGLVIDDDRLSLPAYRTASMDPVAYGVSVLEVLIPRRVQLAEIIRAGREVADWLAGTLPSEQEVSQTADFTDGGESRT