NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213865_10004682

Scaffold Ga0213865_10004682


Overview

Basic Information
Taxon OID3300021373 Open in IMG/M
Scaffold IDGa0213865_10004682 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8161
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (90.91%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001588Metagenome / Metatranscriptome667Y
F009303Metagenome / Metatranscriptome320Y
F022603Metagenome / Metatranscriptome213Y
F037991Metagenome / Metatranscriptome167N
F068249Metagenome / Metatranscriptome125N
F096246Metagenome / Metatranscriptome105N

Sequences

Protein IDFamilyRBSSequence
Ga0213865_1000468214F096246GGAGGMSEISLYKDDNGRKVYKVTTTYTVKTEEFVKVAEGEDPYDVWLDQGGLDYSKINQHCLHEGPHTEAYYAEAFTDGGGDVKYIGTVVPEYDEEYKDEIVDYVLDDTIPEKDLEPA
Ga0213865_1000468217F009303GAGGMLNVLKWVATATLIVGFGFFSAGYGFGWYLQIGGGVLWLIAAVLMKDKPLIVTNGLMTTAGILGRLFG
Ga0213865_1000468218F037991AGGAGMKINQIIAEIHGMNRDDLNKVVEAVKYARSQAHRQMANTLKKGDAVMFDGKYGKTVKGTVIKTAIKYVSVDCGIEGKWRVPAAHLRLAA
Ga0213865_100046823F001588GAGGMQNTTTKTNNVFLNACNACIVVTVNNTVVATDVQTADALVEVFLQHNVNVLTDTIMCSSSIDFAEEEGFASDASVHNIIDEAFEALA
Ga0213865_100046824F022603AGGAGMLLNVNVLQLQGTGDDEYAWEIAAVCASYEDAVDKLAEINADYTDVDSAFFKLNENARIETHDVVDNNWGL
Ga0213865_100046825F068249GAGGMQYTGTNKTLLAFEASNYDYNVKHNCGGDETACYNLTNEQKETLFKVVDKYKFIAGNYEATMIQGVGHAYCDSGIMSDAWADEDVEILNKYLRDTVEGTDNNIFFDTDIVYKCGDDIIDTHTDGARTHMWHNLFIAEMETALGNDNYNVEGVNVDELGKGKYEGYIDTETWAEYAWDLESYMYENK
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