Scaffold Ga0213865_10003914

Overview

Basic Information

• Taxon OID: 3300021373
• Scaffold ID: Ga0213865_10003914
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9041
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (89.47%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002733	Metagenome / Metatranscriptome	534	Y
F003073	Metagenome / Metatranscriptome	509	Y
F016757	Metagenome / Metatranscriptome	245	Y
F029289	Metagenome / Metatranscriptome	189	N
F029934	Metagenome	187	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213865_100039141	F029289	GGAG	MTSAITPRYPNAASDPRLTNTADKWRTLNRQIHDKEWNGEPVTNAERDKLATLKQALNDDKHYTPNF
Ga0213865_1000391410	F003073	GGAG	MAKKLENMTPDERIAYFAALREKDRIQRRNRIAKLSLDQRVAVIKVYELLDEILETALYPDMGGIKAVTAHDLQELSDAKDRLRHEFNFDVRENG
Ga0213865_100039143	F002733	GGAG	MTVKTDKLWIQLTRNEANALMVMLDSEMETRFRYEGLDLKEWETLDLEAYKILAYHRFKTRYMEHFDG
Ga0213865_100039145	F029934	AGGAG	MTTITKTCLACNGGGIAEYDKPVTDFANGGWITSTYGKCDVCDGEGDLHVLSEFTSLDILAFLNESAKILEDSDIVDSTLDDVYGHVKEAKDKIAEYIKFHGYDGD
Ga0213865_100039146	F016757	AGGA	MAERTWEVKVEATTTREVIVHANTEYEAQIKAQIDMVGLVGGENTKVLRVQEITDDNDN