Scaffold Ga0213865_10003136

Overview

Basic Information

• Taxon OID: 3300021373
• Scaffold ID: Ga0213865_10003136
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10233
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (58.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002221	Metagenome	581	Y
F006845	Metagenome / Metatranscriptome	363	Y
F013088	Metagenome / Metatranscriptome	274	Y
F038657	Metagenome / Metatranscriptome	165	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213865_100031362	F013088	GGAG	MDEKNKKALWIPEELHKDIKIFAIENNLTIEQASQMLIKLGMVTYEAEKGYDTV
Ga0213865_100031365	F006845	AGG	MDLNSYLFEEDFEEFCRNSYNKIQVACEFLGIINDEDYHGFKERCYSQLETNYINSIEDLTIH
Ga0213865_100031366	F038657	GGAG	MSILGGMSSTENKQQIYLGFKTMGQKFYANGETEVDVKYLQLDPATFKSGWGRYTKADGFQYQWDSKFTVPEKRPSEEWKRAFSCWVMPHGAEHAYLWQRFSFAETSAFDKILDLFWHDVANNQGKLPVVEFTGSKIIQVGMGSSSELSFKFSKWADRFDGNVVPDWYIDPDAPADDDFVSPNEGLADKVNDMIVKTSELSDDDIPF
Ga0213865_100031368	F002221	GAG	MKTYLDETLETKLKELRDYESETYIRWGSRKRIFKMVGVKFEIKFCKAEMLLRDTMHDGHVKKKLQMVEMMHRAFDALNKKCEESGYTRIQPNTRCFNFDKKTAIVCDTDDEKPILNKIHKNEPDIMIFSVEELLRCIPSDFMKAKELLSKLDKSVNFKRISYD