Scaffold Ga0213865_10002918

Overview

Basic Information

• Taxon OID: 3300021373
• Scaffold ID: Ga0213865_10002918
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10643
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (91.30%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001655	Metagenome / Metatranscriptome	656	Y
F002858	Metagenome / Metatranscriptome	525	Y
F057340	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213865_1000291812	F001655	GAGG	MKQPENDHTKMFGNDGSIHNDAEIIVYYEQHGPAEPVLRIPFWYCKDELGLFSSFEESVRRTAKALAESYTYWPEGYVHVQTIINEEYVNIV
Ga0213865_1000291813	F002858	AGGAG	MLIDEKSIYEVTGGDYSIYCFGYTQARTVTNDIMRRDPWGGIPFVIRKDLEVSFDDKGNVVMPRVVLDKILFIASDELPESEG
Ga0213865_100029182	F057340	AGGAG	VKRLLLLLLLSGCVTESDTRICADYGSYTYMKNKCIPLYGALLCADEEVTEVFCKRYFEDEEKEN