NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0213865_10002549

Scaffold Ga0213865_10002549


Overview

Basic Information
Taxon OID3300021373 Open in IMG/M
Scaffold IDGa0213865_10002549 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11440
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (15.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005218Metagenome / Metatranscriptome408Y
F011860Metagenome / Metatranscriptome286Y
F015999Metagenome / Metatranscriptome250Y

Sequences

Protein IDFamilyRBSSequence
Ga0213865_100025492F011860N/AMAYKKQLQIALDRLDQGLARVHSMVKRGKNAEATHFMENDLKNLYDELQNIITITPESDQSRVGFLE
Ga0213865_100025493F015999N/AMSLNSFFDSLDTEAQFDAWKSSVKQKLIHLKNSIPVENRDELNYVGETLDFLDSINVLSSDFLAHHPNMDNKTTLIKRLETCNSFYRKLGNH
Ga0213865_100025496F005218N/AMANDKFYGYNRKPNKIKGNVAGIDPEFEAVNPYEFKKGMYTELEKLGTTLRESDEDQREKATETVIKNLKDVSAYYSYMEHYETVTRNMDRKPSFKTFLKELEGHSMKEIGDKFTEDKMKEIKLKESIREEVRAKINEIFKTK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.