Scaffold Ga0213865_10002038

Overview

Basic Information

• Taxon OID: 3300021373
• Scaffold ID: Ga0213865_10002038
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12866
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (93.10%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000913	Metagenome / Metatranscriptome	838	Y
F019474	Metagenome	229	Y
F032261	Metagenome	180	N
F033409	Metagenome / Metatranscriptome	177	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213865_1000203810	F033409	AGGAG	MSLGFLYTDKTKRYTIWESVPKAEWLPKGGLSWTNRGTFKATNAYSAIEQAAHGGYYVKAGDKITNSNGPEIIIKTEGTV
Ga0213865_1000203815	F019474	AGGAG	MNIVFEADTYKVPSFALPALVNGDYTGIMDDDEAFVDNLCEWLNGQYGEGLWHIGEIGEQYFGRADFENLLGDVRDVEIVYKLVEEV
Ga0213865_1000203817	F000913	AGGA	MTHWELEHNGEHIRIEWNNSATFNLQVPIGGQWVDYHCFTCYGIETEQEALELALDTLNELEQE
Ga0213865_100020388	F032261	AGGAG	MAIKIDTEADYVLEAYWWSHKVVDNVVKKHKKFVLACVTAYRDYESEEIESIQLTEMLQLRDKLIELYRCHPDGEVCVELTIRQEFVNV