Scaffold Ga0213865_10001716

Overview

Basic Information

• Taxon OID: 3300021373
• Scaffold ID: Ga0213865_10001716
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14132
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (10.34%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009889	Metagenome / Metatranscriptome	311	Y
F012934	Metagenome	276	Y
F021435	Metagenome	219	N
F036974	Metagenome	169	N
F042076	Metagenome	159	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213865_1000171615	F021435	N/A	MKCPQCAMPLKWKEQHEYEDFNLEGEGIINVHFCTNIDCNVEEVYIFQKDDATL
Ga0213865_1000171616	F012934	N/A	MNSLEILKAKINLKTTLIKFKSSLEELREKHEDRTDLIESMQESANDIEHFHNVFLQFEDEYYLECKANMRNQIIIAEHKHEIDKLNKLVENLKKGI
Ga0213865_1000171624	F036974	N/A	MNDPFKLEFWDNFNDSLYFDYLLKREEMLNTYRITYKTYKGSNTSAPVSYAIKYIKAYSRQDAINAFNLWKGLIIKVEICD
Ga0213865_1000171625	F042076	N/A	MRMQFNSYVLLHTFNFWIMRGEIEIYNIEDDIVEFGIHDTSFRVCIENETYWIEEAVSFNSFTDEIQYEEHQETTTFVRIDTLECEGILYYSKEDICSELERILNEDK
Ga0213865_1000171628	F009889	AGAAG	MRIYSFICVLTLFSCSANYHYQKALKKGLKPLISSDTIRIATIDSVPMVVHDTIVYEKYFSSKDTIVHYENVFVPKTRLETRIEYKIHRDTIRLETRVEVQKAKASKQPNYFWLIIGVCILGFFMYVAGKLVNKFI