Scaffold Ga0213865_10001340

Overview

Basic Information

• Taxon OID: 3300021373
• Scaffold ID: Ga0213865_10001340
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16112
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (90.62%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037491	Metagenome	168	Y
F070058	Metagenome	123	Y
F100034	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213865_1000134011	F070058	AGGAG	MIGTYFIVHKFDRDVWEWVERSPDGSDHFSTLDNAKYFCDAYIKDGEECRVIREEVVYEPDA
Ga0213865_1000134013	F100034	GGAG	MSDYLLTGKDQLEEHRRCLNVIRSAIEYDVINSIHCDVYEELEVLLHDAVRKMDEIHDRLKEHVYAYDVTVTMSRRVYVKGRDEEDTEQAAYDYALGELDLPSDWSEDDVQVFRDECEETTSVYDVAV
Ga0213865_1000134014	F037491	AGGAG	MHFTENRVAQYFIDTVLSDPDKSISVFGEGEGPDVKKSREHFTVLDNMGQCDFDDVQVWSDKENKYVAWFQFIYGNVTSTSEPMEVIGNYSANEYADRIINKVEWCTE