Scaffold Ga0213865_10001307

Overview

Basic Information

• Taxon OID: 3300021373
• Scaffold ID: Ga0213865_10001307
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16308
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (29.63%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011354	Metagenome / Metatranscriptome	292	Y
F020000	Metagenome / Metatranscriptome	226	Y
F051534	Metagenome / Metatranscriptome	144	N
F065740	Metagenome / Metatranscriptome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213865_1000130711	F020000	N/A	MAAVATTAVDRFTNVVEYTGATMTAVNDWFAVHGHTSEYSFAAAVTSEGNFTLALEANFNGNGNWFTIDTSKTINESGQYVYFYNGKPASQIRMRIASISSGTVSLTPHIVTAYHG
Ga0213865_1000130712	F011354	N/A	MGTRIVTGFCTHLEVDSESRTTEASFAFMTPQDPEDFAGLMVRLASGIEVMIEVEDEDD
Ga0213865_1000130726	F065740	AGGA	MSAFAFVNYARFMQDSSTPTVYAYQNFSVNLTRTYGGITYSFLPFAVSTGAGSKGGDRSEAVLGAATNEISVNIFAEAVQSRWLLDLKTVSLDVTNFSDVALIRSELWRVASYDMDTEKVLLKLTSPLDAVASDVPRRVLNTKIVGALPTSGSLVVS
Ga0213865_100013073	F051534	N/A	MATKAEIEQRQSVIRGWLESGITHSSAATMASVRFGISRSVSYDAIRQAQQTIDSSDDGPAESEQDLEPLSILATLQHHFNIAAASGDVPAMAKLIQSMDKARAWRGLKQEKLSPLQSPH