Scaffold Ga0213865_10000723

Overview

Basic Information

• Taxon OID: 3300021373
• Scaffold ID: Ga0213865_10000723
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22246
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (69.64%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024076	Metagenome / Metatranscriptome	207	Y
F043416	Metagenome / Metatranscriptome	156	Y
F077166	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213865_1000072322	F024076	AGGAG	MSRRITFEESLGDNDWGLIIDRDGHLKGLFIPDGSSEDDVPESIIQLCCSQFGIDPEEFCGEEERPTLLH
Ga0213865_1000072329	F043416	N/A	MKKLAEWLDICKKHWKEIFALSFALHFVMDLLVIGPLFFLLGYFFGINVEH
Ga0213865_1000072332	F077166	GGAG	MSKQKVEIMEGPFSAALVEDTEGVIYREIKTVRIKNGMLTEYITRREYRTDGDYNDTQTTRPLAKAGV