Scaffold Ga0213865_10000566

Overview

Basic Information

• Taxon OID: 3300021373
• Scaffold ID: Ga0213865_10000566
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25027
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (27.91%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009843	Metagenome / Metatranscriptome	312	Y
F019648	Metagenome	228	Y
F032280	Metagenome	180	Y
F046021	Metagenome / Metatranscriptome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213865_1000056618	F032280	N/A	MADEITLKALCLLREADPNQDELNSLDKFIAHQAEVVKMFEQFKDHPRANELKPRLTVFEESAYAFTYVYTKMMAYKREKLLADSRELEMANAVIELKQELDILTKLNKDE
Ga0213865_1000056619	F019648	N/A	MNSTELELLDRFAKKYDIDCKPSESQYDFWDFTYEWDDRKFYCEMKKRNFTLDYAKENYTGGLLLEMHKYERILRRAKNEKGSQGLYVNFFDDDKVLIYNLNKVRINKWFWKTMPETTDFGRSKYVYKYITFLDYDKGKVLYI
Ga0213865_1000056620	F046021	N/A	MTKKKLTPKYNDNKSIRARIDKLLEKNTSNVANSGTGSKLDVGDDSKVKEAWQEIQAKIKEIDPVFYDIIKER
Ga0213865_1000056636	F009843	AGG	MKKVELGGQERPIRFSYLALKDICNKCGLKLSEMNQLGSEIDHIGIITFFGLKYGAKKIGEPFNHKISDIEEWLDNEDFSKINEIFEAFQLDQPQSEGK