Scaffold Ga0213865_10000530

Overview

Basic Information

• Taxon OID: 3300021373
• Scaffold ID: Ga0213865_10000530
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25846
• Total Scaffold Genes: 50
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 40 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010277	Metagenome	306	Y
F019561	Metagenome	229	Y
F057326	Metagenome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213865_1000053015	F010277	AGGAGG	MSRLKDKLLEVELFVGEKLQDLTNEQVIEEVRKHYGSQMFVDHAEELLHEFQQEVNLERMQSW
Ga0213865_1000053017	F019561	AGGAGG	MDKFTRPILKNLRTSLQDILKAESKSDKIPFELTLGNCSFDEDQAKFQLIVTFKGTSVQDIQRKKEYEDLQQMAEFFDIDLLKKHPRYTLVGYKMKARSKPWIITDNQRSGEYIITDDQAKMLFGKQEKVQANA
Ga0213865_1000053031	F057326	AGGAGG	LKITNNHSERALRSQISKVFKDLKKANKKKEDNTWFEDDPKAVKEIEYGRVYHEPTIQPFTGGYNTLADIMDKGGDAYVRYIAKHGSARDGVRYTYKKGKK