Scaffold Ga0213865

Basic Information
Taxon OID	3300021373 Open in IMG/M
Scaffold ID	Ga0213865_10000406 Open in IMG/M
Source Dataset Name	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021373 Open in IMG/M

Scaffold ID

Ga0213865_10000406 Open in IMG/M

Source Dataset Name

Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	29156
Total Scaffold Genes	50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (22.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

29156

Total Scaffold Genes

50 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (22.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location Name	USA: North Carolina
Coordinates	Lat. (^o)	34.7181	Long. (^o)	-76.6707	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

USA: North Carolina

Coordinates

Lat. (^o)

34.7181

Long. (^o)

-76.6707

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005010	Metagenome	415	Y
F006322	Metagenome / Metatranscriptome	376	Y
F032817	Metagenome / Metatranscriptome	179	Y
F101206	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213865_100004062	F005010	N/A	MFRKKKHIREISKYLDALLLDQVNLTIYASRFGWTEEIQNQITNTALLIRKYERRLRLIR
Ga0213865_1000040630	F006322	AGAAGG	MAIKKDNKGNITKGRGSELTDLQNAFMERVYSEGIENGGKIARDLGYTNYYRDRRTEGTAFHREMMRFVNQETKSIEAAKGTNLSKLISIRDMALANGDMKVAMDAIRIINDMQGYKAPTKVEQTKIDITATIDLTKQPDEEQDYLDIDAELLDG
Ga0213865_1000040641	F101206	N/A	MGTSINTTPNLSNPESLWGDRSRDLFIDSMVKSAAVLDRFTLIDGVKNKVNVPIFDVTTSAFQTGDDCEFSDNNTAAITEKEMSVETFSWNFKNCKHVLEKSYRGIALKKGQHNPETMDVEFRNWVFDYFAKLAAQKALTYAASELVTEMGADSDVNDYLLTGLSDYAAAGDLDKDNILAAMEGMYEAMTDVMLAGVYGDADREYRPAFFLSTNAYQLYQIAIANKHTTTPAGIVAGELPTFYGMEVIHLSSLASEEMFISAPSNLVMLTDDYNDVAAIDSEYEAKENAEYIWGRFKVGFSYLKGDEIVLANPAA
Ga0213865_1000040645	F032817	GAG	MAFNCSILLSDIDINCNKRVSGGIEKVILLLQDDLTVTFDPNDETVVTQVGTNNTVVFSHNIKDGVTSFDENKSISNALGIVTTNIIVQLPSVDNKINKLDYMSRREDIVAILVHNNDSVTISGWKDGLTMNYEANSSAGPSDKSYVNVALTTQSSKASLALDDKTVFTDQTIFD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0213865_10000406

Overview

Ecosystem & Geography

Associated Families

Sequences