NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213865_10000245

Scaffold Ga0213865_10000245


Overview

Basic Information
Taxon OID3300021373 Open in IMG/M
Scaffold IDGa0213865_10000245 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)36050
Total Scaffold Genes46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (39.13%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006610Metagenome / Metatranscriptome369Y
F043092Metagenome157Y
F081781Metagenome114Y
F089438Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0213865_1000024512F081781N/AMNQQELTEKITENLTSSDRFDNWDKLTPEDSDYMMYSPTPVGYNTTAEQRYLMQNLLIGWNYESILDVGCGRADLYGFINDFYTESAYSYHGIDHNPIMTNIAKQKYDIECLTNPFESAKLPETSWVVANGLFTQRRCETEDEDLQKLFEDLDLLYNKATNVVSFNLLNPINNTHHEGFFYVHPGLVLDMLIEKYQNVVLRNNYSKDVYTVTIYKI
Ga0213865_1000024522F006610AGGMAEFRYKNKLTDDIEDAKEMVRTTGKMLMEGKIDKKSAVDNLARAFRKLESAKYYIDRS
Ga0213865_1000024524F089438N/AMKRNKVTKNNGYKKLQCKYCDRICQRVDVNATKVTCWKCTSDLVNGKVLELRK
Ga0213865_1000024541F043092N/AMIRLKQILTELSNDELSVLLRKIQNNEFRFFDQGDNGRVYEIDGEDKLFKITTESEEFEVAEVIVGRKGEFSAFIPIYYVNEKKLLYIMSKADQLSGNDKQNIEQFLQGYKSYAREMGGEVSIFDYLSDDGARDLDQEIVSFLRSLQTEIKKMGIVDLELNLDFKTDNVMRWQGRLVLID
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