NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213865_10000156

Scaffold Ga0213865_10000156


Overview

Basic Information
Taxon OID3300021373 Open in IMG/M
Scaffold IDGa0213865_10000156 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)44927
Total Scaffold Genes68 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)63 (92.65%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030742Metagenome / Metatranscriptome184N
F070161Metagenome / Metatranscriptome123N
F105230Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0213865_1000015621F070161GAGGMSFNASDLLKLVQDFGETLTLRKVTAGGTYDASTGTVSGSATTDYSFTGYFYNLAEGISDLNQTRKGRRACVIPAHGLTTTPDDEDQILGRGDTVNITTVRTILSGGQAVCYLCEVFD
Ga0213865_1000015629F105230GAGGMANLDHKRGDTFQLDFTLENNDVAVDITNFDIRAQARDATGNLIVEWNETQSPPGVNITNASDGQFNLKSEAAYTTTPTNQLATVSWPLGVLNVDVEFKDTSASPDSVSSSETFTITVIEDITRT
Ga0213865_1000015648F030742GAGGMKQVLTSGIIAVALAGVAAAQVEEVYTASPSNTYLEIGTTFEDETIIALGTGVAAGAVSAFAELSGTTDSNFKARAYTEADLGKFKITPGLNYNWGADGGDIIGLGDGNEWGEVTADLELSIHPQIVGGEYAFANTEVGFDGWSLDWRGGEVGAGYKLDLAENVYLDGRVSWSYDDQFEGGQRRILAGIGLRF
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