NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213863_10342168

Scaffold Ga0213863_10342168


Overview

Basic Information
Taxon OID3300021371 Open in IMG/M
Scaffold IDGa0213863_10342168 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO497
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)617
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011124Metagenome / Metatranscriptome295Y
F016757Metagenome / Metatranscriptome245Y
F074150Metagenome / Metatranscriptome120N

Sequences

Protein IDFamilyRBSSequence
Ga0213863_103421682F016757GGAGMPKYEVKVEATTQRDIIVDAVSEYEAWILAQIEMRGLVGGENTQVLTSKEIDDV
Ga0213863_103421683F074150AGGAGMSKYEVTRSYIVACVATIEAESADQAKIIALNFDGIHWKEYDGDYEADITVEEIDNV
Ga0213863_103421684F011124AGGAGMFDPDKTYGTLVWDMTVAVWDDDADDYVRNEDGSIKLFDIPNYDYSYICDGIDVDDLH

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