NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213863_10307930

Scaffold Ga0213863_10307930


Overview

Basic Information
Taxon OID3300021371 Open in IMG/M
Scaffold IDGa0213863_10307930 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO497
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)662
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F093288Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0213863_103079301F093288N/ASKLCKICQLHISQFQQLTISAEHVAQQHHVYANHERNKLMDTGLMKPQPNRPTTTSSPLLEQFRAVLSPTGGSPRTLEEKLAALSDTELQSIMQTAKFVQMAMQFKLAANDKTMGWPELVQSMYRGMGIDRRSLIAELLEETDPLPFIPEPKAQKSSQQMGQAIYQRPEFNAAPVSTATADDDTATALESVLADTFPEPRSKPQPKQSTTFANKDAFLAA
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