NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213863_10307053

Scaffold Ga0213863_10307053


Overview

Basic Information
Taxon OID3300021371 Open in IMG/M
Scaffold IDGa0213863_10307053 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO497
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)663
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016497Metagenome / Metatranscriptome246N
F081863Metagenome / Metatranscriptome114N

Sequences

Protein IDFamilyRBSSequence
Ga0213863_103070531F081863N/AMTITPDQFKEIMRLFDAGDFESRKEAITMLYNGYSRHYLVVIKRDFMHNNYDDDTAAEVLQDVFLSLLSKQTKPSSEFAIGAWLKSYVFNVTRDNLKKSYRHKEFAYHSDTKSDDAAISSVVDSDN
Ga0213863_103070532F016497N/AKLEEITVEDMVLTPLGCKIVADTVIKTLAEQIGKWSEEYPEERENYQADVEVLWRTLWLLNKCDFLFKDPAPKNEDLAA
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