NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213863_10055692

Scaffold Ga0213863_10055692


Overview

Basic Information
Taxon OID3300021371 Open in IMG/M
Scaffold IDGa0213863_10055692 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO497
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2029
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006728Metagenome / Metatranscriptome366Y
F008731Metagenome / Metatranscriptome329Y
F073418Metagenome / Metatranscriptome120N

Sequences

Protein IDFamilyRBSSequence
Ga0213863_100556921F073418AGAAGGMTFDKAHLKLIRTSMQEALDSAGIKDVTIKVGNCSYSGGEATYKIQVLLDGAETQEQNALSQMAGYFNLDTTKIAEIQGHKVSLYGYNSKARKMPWQVQSLDGKDKWKLTDEQVRRLFEK
Ga0213863_100556923F006728N/AVIGMTKIDFNNIVVRHNGRTISIAQHWTRTSDGDFVNVQEIAEIDELYHDDYDPIRFDDTVDGLINALQAIKKEIDL
Ga0213863_100556924F008731AGGAMFYCIATKPLNDRTNGFRFNVLGLKGLTRKRKHASRGFKIDAGNCMTAIHLGKRTIYIERKPNRTSERRVRHFAG
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