Scaffold Ga0213863_10046049

Overview

Basic Information

• Taxon OID: 3300021371
• Scaffold ID: Ga0213863_10046049
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO497
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2295
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003073	Metagenome / Metatranscriptome	509	Y
F007346	Metagenome / Metatranscriptome	353	Y
F007947	Metagenome / Metatranscriptome	342	Y
F049286	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213863_100460491	F007947	N/A	SLTMLDCNTILCLQNQMPDVGMDDLLVIGYLVGGLGIIIYLVMDALKEK
Ga0213863_1004604911	F003073	AGGAG	MPKKLENMTQDERIAYWAAQREKERIQRRDRIAKLSLDQRVAVIKVYELLDEILDTALYPDMGGIKAITAYDLQELADAKDRLRHEFNFDIREHG
Ga0213863_100460494	F049286	AGGAG	MPKYEVTRSYSVSSVATVEADSHEHAEEIALHDADVYWKEYDGDYDAEITVEEIDDV
Ga0213863_100460499	F007346	AGGAG	MNSNEIKGIQLSQAVKWSGQDIFEVASAAFEDANYHSFNVVFHAAWYKFQKELEDVQ