Scaffold Ga0213863_10041887

Overview

Basic Information

• Taxon OID: 3300021371
• Scaffold ID: Ga0213863_10041887
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO497
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2438
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001611	Metagenome / Metatranscriptome	663	N
F007750	Metagenome	345	Y
F021299	Metagenome / Metatranscriptome	219	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213863_100418873	F001611	AGGAG	MPLVQKTLTLAAGATSDNILANTNYEFVDGNVRLRVASAVDTAGTSATSDTFLNVSVNNAEYSKDVSVPALVTGQPFGVLNGSYTNNDLLTTGSQRNRVLVRFTNDTSDTRTIFCGVFIG
Ga0213863_100418874	F007750	AGGAGG	LAFLGDFGKFFGLGSSKQVLGDVGGTVGSLVGLEGAGRSAGEFIGSATSSIGGGSNVNISPLSTADQALEQSAVPVSSIGQARPSETSNIGTTGMVTQAGFGSLAPFVTGLGRFLGSKTGQIATGVGTVGAFGGTQLMGMNGREKPVLTQSRRNKAKVRQLVNFMGIEGTANFLSQSIGQNVSPNDVVALLLRTFRNDGAYITKAQVRNLRRTTNRFKSLEKQVKEATSMSRTTRRAPVRRASSTTLIKN
Ga0213863_100418875	F021299	N/A	VRVGKLLNSVKGLEWDTVATLTGDIGTIKKSIQTLNNRINGLNSPKLNDELLHYAIKQQNGAMHPPTEKLGG