Scaffold Ga0213863_10018817

Overview

Basic Information

• Taxon OID: 3300021371
• Scaffold ID: Ga0213863_10018817
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO497
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4024
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018270	Metagenome	236	Y
F042027	Metagenome	159	N
F075343	Metagenome	119	N
F089424	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213863_1001881711	F042027	AGGAG	MFDTWDQALHMRDKLHEVSRLADSIGLLASDIVDDFDNHKRCAINEEQLRETLKELNNTLEGLNL
Ga0213863_1001881713	F018270	GGAGG	MRPDYTIQSDWSKWEDHAKTCDVRALRHIIADCRNAAAAMRSHNTDKEGYYIDQACTYSDELRNRLT
Ga0213863_100188173	F089424	AGGAG	MFALIATKPLNDNTYGCRFNLLGIKGLTRRRKFKSRGIKFKALNSMIALHFFKRTIYLEKKANRTTSRRVRHFAG
Ga0213863_100188179	F075343	GGAG	MNKTQRLHREIMGELMQHLSKNDAEYFANWLLTHYKISEYKDVQPLNVGQSDTKS