Scaffold Ga0213863_10015796

Overview

Basic Information

• Taxon OID: 3300021371
• Scaffold ID: Ga0213863_10015796
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO497
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4476
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (81.25%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002399	Metagenome / Metatranscriptome	563	Y
F004603	Metagenome	431	Y
F037256	Metagenome	168	Y
F048285	Metagenome	148	N
F059873	Metagenome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213863_1001579611	F002399	AGGCGG	MSNETRSKNKSIIGQLRKKYGLKDNTPIHKVEIAMSPKDWKEFSEALTFPNGKPTNRGK
Ga0213863_100157964	F048285	GGCGG	VKIDSIQLEQATAYILETNKYIYEQAEELAKQHLESSDNKNFKARIKRYEPESKETLLHFTDEITAWAECEKNYPLMDFIYKFFQIKKGYYE
Ga0213863_100157965	F059873	AGGAGG	MSIEYIGVKIKATTYGDFPDNVKEITHAEMQFSVPCDESKAKKFEKAKDNLLKSVIDMYALEDQHQVDVTIEYEYFGVNEQ
Ga0213863_100157967	F004603	AGGAG	MIFSININEHIIDWCYTLNNQEKQYYQTWIPKLSDIQIVTKELNGLTVSEVKKLILEDIQPDIQMVRDNTNQKAKARRQKNV
Ga0213863_100157969	F037256	AGGAG	MSNKKEYIFSNTFTVTEETEVLANSYEEAVDIFLSGGGTTDEVDSCGGNWECIQEPIEEEEQKQ