Scaffold Ga0213863_10010853

Overview

Basic Information

• Taxon OID: 3300021371
• Scaffold ID: Ga0213863_10010853
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO497
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5634
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (21.05%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Parvibaculaceae → Parvibaculum → unclassified Parvibaculum → Parvibaculum sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008239	Metagenome / Metatranscriptome	336	Y
F010650	Metagenome / Metatranscriptome	301	Y
F084839	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213863_1001085316	F084839	N/A	MNRPYKYITVLDYSNGQVYLYDYDETEMPSAAKFVESRHDLDKVNYMVHQYTPALWTKDLYYCNREQAYQLTNEEE
Ga0213863_100108534	F008239	AGG	MTNREILLEMYEKLWNADKDKWAWNVILKDTLEKIETFNTKER
Ga0213863_100108535	F010650	GGA	MFKTKKSIMSKMHQFLRIANARLRKIYPNKQQRKAWAANMWRRWIERQNIEKDL