NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213863_10010710

Scaffold Ga0213863_10010710


Overview

Basic Information
Taxon OID3300021371 Open in IMG/M
Scaffold IDGa0213863_10010710 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO497
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5680
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (80.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002593Metagenome / Metatranscriptome545Y
F037471Metagenome / Metatranscriptome168Y
F046689Metagenome / Metatranscriptome151N
F070149Metagenome / Metatranscriptome123N
F099884Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0213863_1001071010F037471GGAGMAQMRVKDQDLVVEQVVEKIEATELNKFKARKDVQAVQSDVEARIEVISRLFEQYKELEETIKAEQQELKDLVQGFQKANGFEYSSYATKQGIWLDNISTYGVSVPALKIVWQLPYTTKHEISTKLRLQTMGGDFDVYKLIEELTSEFSL
Ga0213863_1001071011F002593GGAGMSKLIYSRNGSETTESIRNASPMIQAIWNQAHSFGANIVRVRAEKNRFGADTGRTFNSFHHEKVSVYKQKDQVNQNNALYFAQKIPVTKANTGMQILEVASNLDVQDTLDIIDEIQYYSETSFLGRLWNRIRYGVPMSINS
Ga0213863_1001071012F046689N/AMKQGHLINKINKLIPVAKATPMSEFYGDDSTGIWIRGSEYSYKGSLSYERLLFEYYSDDDSVHPDLLEIIEDAGWYGEPYDAGTLMLYPA
Ga0213863_1001071015F099884N/AKLLNPQMSDHYLTFFQGKYGMKLYDIKVGRKWVFLRSKSHRVRLPLAKFKTQAFVQWHCDARTHASSETYAETGRYKKAKGWWKNYGFESNPADVNYDRGHLIWK
Ga0213863_100107109F070149AGGAGMQTIYHIVAEVCARDFPILAKLSVNQGHKFIDIIYEDIISGDNPTEITEQQIFDYVEEFIAKAISVSIDDVVDVMEKPNDSQNMS
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