Scaffold Ga0213863_10008237

Overview

Basic Information

• Taxon OID: 3300021371
• Scaffold ID: Ga0213863_10008237
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO497
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6638
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (30.77%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F058510	Metagenome / Metatranscriptome	135	N
F076587	Metagenome / Metatranscriptome	118	N
F083373	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213863_1000823712	F083373	N/A	MSTHPFDTSNFASVKLKDVPSYLQNEAADYNLRVAAWFDNYAVNAARVDAAMADQDKLWKMRTAEGWQADEGGWYTPTGISEHDWEHDYGNPFPEEPVWENYKALKRCTAGWRIDDTGWYSPEGQHESEWTGPLPEYTLL
Ga0213863_100082375	F058510	N/A	MLLTETELNFKPARYKESLPAEVCVTFSAADSNKRPYIEGKIVNPAPDIYDRLGHPATTMRCYCHSDISTEDQKEIIGDIDAGTTIKVLAQQPSTKYDGKAFGTIMHGLWTKAAQQQVSVPTAAVKQTFTVSNMPSDLVERMDAKLNDLDVKRTFFLKKLINKFLMGDFDADFV
Ga0213863_100082379	F076587	GGAG	MAHAQLLSYSYTKGSDALFVEAIVDDAVQVLPATQVDPPEFDSAHCEAVILWDEPLDHTNAPTREQVERLLPWITDWCVIPPITFDDD