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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300021371 Open in IMG/M |
| Scaffold ID | Ga0213863_10007094 Open in IMG/M |
| Source Dataset Name | Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO497 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7235 |
| Total Scaffold Genes | 18 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (27.78%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (28.57%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: North Carolina | |||||||
| Coordinates | Lat. (o) | 34.7181 | Long. (o) | -76.6707 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F046345 | Metagenome | 151 | N |
| F057323 | Metagenome | 136 | N |
| F071009 | Metagenome | 122 | N |
| F071183 | Metagenome | 122 | N |
| F073484 | Metagenome | 120 | Y |
| F086945 | Metagenome | 110 | N |
| F090089 | Metagenome | 108 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0213863_1000709410 | F090089 | AGGAG | MSVTYYLTDHNGNQIAFFYRVESERYNTVPNILWACRQYPQFQGSASSKGDFIEQAKQTLKEIKKLSVPVRKTCDVCDKSLQGRENEGTTCNDHNFNR |
| Ga0213863_1000709411 | F057323 | N/A | MKILVLTIRAHGEEDDIYVFDNREVNVLPAIKEWLKDNDIKITLPDHVTDTYSFMDWFYDAENSLEDCYDFFVSLQYKELLSE |
| Ga0213863_1000709412 | F073484 | N/A | MKINQPTDNSLYVTIGNFTYYFDDSIDGEYSVNRWHKDDDDINDPKLLQTTEDE |
| Ga0213863_1000709416 | F046345 | N/A | MNIKINVREDSMGCLYLTPVKQSYIDQIIEYLKEFNVDSDGSVLIQSDYEVESFYEDCTYRQRKDIQQGWGANMLFDAWVFLNYIGWDACEGLELK |
| Ga0213863_1000709417 | F071183 | N/A | MKTILKEEYKLTNDGDAWGNCMQWLFAICDFLTFETDECIPNEWQFRASPMGANEDCFCYQSLRHFAFEKDITDADVLEFGKVLARLRDILERKGLSY |
| Ga0213863_100070944 | F086945 | N/A | MSTKFDINEEITDCPFDWSSIDHRAIADGWYHFWGNTQITSFETDKKGKYVRDEDGKLIAHRTKISRKLPRTWFNKQQEGQEY |
| Ga0213863_100070947 | F071009 | GGAGG | MTTDPENLPSLDDASLDALIQHYLSLKQKLTDNLRVRERLVELQDEQLKRQIEALGNYEPIGDDIKNQLNNQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |