NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213863_10004132

Scaffold Ga0213863_10004132


Overview

Basic Information
Taxon OID3300021371 Open in IMG/M
Scaffold IDGa0213863_10004132 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO497
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9829
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (16.00%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (22.22%)
Associated Families9

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003835Metagenome / Metatranscriptome466Y
F019559Metagenome / Metatranscriptome229Y
F022858Metagenome / Metatranscriptome212Y
F025148Metagenome / Metatranscriptome203N
F045652Metagenome / Metatranscriptome152N
F053650Metagenome / Metatranscriptome141N
F061284Metagenome132N
F062719Metagenome / Metatranscriptome130Y
F091975Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0213863_1000413210F062719GGAMTKQEIFDQPIWPSRLIFNAKLLLNKQYKDCDFDERLTIRCHILGISKNEIK
Ga0213863_1000413211F019559GAGMNEEAFNKLMGYPMETIEKLVKQAKEINRNRIVDLNQRDLQQNGIEND
Ga0213863_1000413213F053650N/AMKKLIRKRRHMIYVSRYLVELQWDSLNTMLVASKTQWNDDIVKSLDNNARLIRKYQRRKRWLTF
Ga0213863_1000413215F025148N/AMANVDFAKGHGTILSGSVKYARLTNESGPDGMSEKYGCDLYLDDASIKQLNDLNILDHVRAKDPQGNFKHEEPVVKIKSINIPKGYLANRQIFDGLIGDGSEIRANVWIKKWEHKGKKGLSIWLSAYVITNLIEYATNDSDALFEGLPDVGELMPNQGNVPTSKPNVATATANDAFGESSDDLPF
Ga0213863_100041322F045652N/ALKNVLKQTHKICTKCKTERPIEQYNKLIRGRGGRRAQCKHCDKRYSEQRGLNIPQEGGEYKLNKQTMMNHMYIHFGWWESKMTAVERDQQRRDVRKYYKPEQKDKLK
Ga0213863_1000413224F091975N/AMETQELIIAVATILGSGAAFKFYEYSIKTKRDAARELRQERRAENPETMFRDDLKKRVEEMSVALDSANLKILELTQKVAELETENKYLHREIDILKRK
Ga0213863_1000413225F022858N/APRTETKGEGQIKVGGMKETLTTIKTNIKTILSFADSEFLELLIAVLHTFLLPLAVITEIGFKWHIVFAAFFGGLFQFYSVGMRNLKCRYYSTIIATIVAFLTTEEYIITGKMFEAPSRWGWAFISFAAIINQIRVTKQWKHKN
Ga0213863_100041323F003835N/AMKIDLKVRNQIAQLIVDMEVGESKPIRKHEMVPVIKEVNDTALIGHAIRFVKNADDEVIALKKYRKTAIEKRFETNT
Ga0213863_100041324F061284N/AMKYEDYQRFEELAFDHLLKRYGWKVHTTPKYALIDGVATKNNEVTHIVEFKSRNESLESMERFGTYLISYDKILNGIEMSRMMCVPFILIVYLIKDGVVIGLELGDEYGVAVPMEIKETRTQKSIDGGEAIRRNAYIDIEKFHIL
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