Scaffold Ga0213863_10000937

Overview

Basic Information

• Taxon OID: 3300021371
• Scaffold ID: Ga0213863_10000937
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO497
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21869
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (11.11%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026881	Metagenome / Metatranscriptome	196	Y
F101156	Metagenome	102	N
F103281	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213863_1000093726	F103281	GAG	MYETQGLKNDIIYQFYYITLYDYEKGTELDELRIILYDYEDKEMYLECEGIKLAIEKIEFTQLIQNIIDDNERD
Ga0213863_1000093730	F101156	N/A	MKKEITVEYDNIALVVVGEYQKGQDGSYMYPDFSSDFNCFKVLCGGQDIIDILEQEVIDELENQAIEIIEEKW
Ga0213863_1000093732	F026881	GGA	MKNKKYTTKERFKILESTVATLYVAIEKQSKKIDVIDKFLTKATKDYKDE