Scaffold Ga0213863_10000898

Overview

Basic Information

• Taxon OID: 3300021371
• Scaffold ID: Ga0213863_10000898
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO497
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22235
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (16.28%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001728	Metagenome / Metatranscriptome	645	Y
F001913	Metagenome / Metatranscriptome	618	Y
F013081	Metagenome / Metatranscriptome	274	N
F019630	Metagenome / Metatranscriptome	228	N
F042278	Metagenome / Metatranscriptome	158	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213863_1000089817	F013081	GAG	MQNKNTNNMELIKLINTIDPEYFNTDFCINSLPNEVTLILDTEQYLIEVSLKNEILETNFYQGEEIYKASDDEIDYIYNYLEQLLADKIEETKQYYNEHNYNYQIWN
Ga0213863_1000089826	F019630	N/A	MPKIKKKINSNKWNYKHQQYCFKKGFIIYPVVCGKMFKVYCNRIKGNYYMKGKEFNKEESFQAIWDLYTKIYNYDINKIRD
Ga0213863_100008983	F001913	N/A	MIKEILELLKDTDCNAEIVQIAKGKNKFPDSFKEVFKRQKQEIKWAKR
Ga0213863_1000089835	F001728	N/A	MNSIELKPTENKDYYRLFLNGVDVTGEQERSTFRHIIEVIDNGITTGI
Ga0213863_1000089837	F042278	N/A	MRVNESLWDALKNTIEMHTEQDHNITDVLINYQVKENNGIKNIIKLNVTID