Scaffold Ga0213863_10000708

Overview

Basic Information

• Taxon OID: 3300021371
• Scaffold ID: Ga0213863_10000708
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO497
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24794
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (91.43%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001655	Metagenome / Metatranscriptome	656	Y
F002858	Metagenome / Metatranscriptome	525	Y
F042908	Metagenome	157	N
F056585	Metagenome	137	N
F071124	Metagenome / Metatranscriptome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213863_100007081	F042908	AGG	LLTTLSMLTPVALLLLCGFISMKFSHGDALTAGSANHILAVPAGHDAIVTYLFISNTGANKSISAKWVHGGVNIDFIAGKNVNADDFLEFGGQHGEFLVAKEGDTITLTPEAGSTFVSIISFDLIPATPRLNF
Ga0213863_1000070810	F071124	AGG	MTYAEYELGYYMGDSEDCSGPPEDPETQAMLEHLIEFETEMYRLNCKRRLSGCTYRQLKGLLINLHGEDWKDAL
Ga0213863_1000070812	F002858	AGGAG	MAIDEKSIYVVDGGDYSIYCLGYTQARAVTNDIMRADPWGGIPFVLRKDLELSLDDRGNVVMSKSTLDKILFLASDELPEGDQ
Ga0213863_1000070814	F001655	GAGG	MKQPENSHTKHFGNDGPIGNDAEIVVYYEERGPAEPVLRIPFWYYKDELGLFENFEASVHRTAKALAESYTYWPDGYVHVQTIINKEYVNIV
Ga0213863_100007089	F056585	AGGAGG	MTRETWEMWADEYQEYYEDETPVYPDDLEEFKKEEQKVIDEVIRAIQGLSS