Scaffold Ga0213863_10000653

Overview

Basic Information

• Taxon OID: 3300021371
• Scaffold ID: Ga0213863_10000653
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO497
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25833
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (79.55%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002221	Metagenome	581	Y
F007417	Metagenome	351	Y
F008346	Metagenome	335	Y
F063662	Metagenome	129	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213863_1000065316	F063662	AGGAG	MEVVFNILGGGEIRLPKREVRGYYKDFITGETKVQVGNDEHKVRESLTEIAYLMGVVQ
Ga0213863_1000065320	F007417	GAGG	MTRYTLEVKLPSLGWVVAIKTSDLVYAFSKMGRLKRQGHEVKLTKKRGK
Ga0213863_100006534	F008346	GAGG	MPIKFKPSVKVRDRATGKITVEHSYIKSMTIKELTDYIESSSSKKKVIQKCKNEIVRRNV
Ga0213863_100006537	F002221	GGAG	MKTYLDESFESELKKLRIYEAESFERWGSRKRIFKMLGVDFEIKFCRAESMLKDALYKGHVKEKIKMVEMMTRAFDSLNKKCEQSGYMRIQPNTRCFNFDKKTALVCDTDDEKPSLLKIHKDEPDMMIFSIEELLRCIPEDFMKAKELLSKLDKAVNFQRISYD