Scaffold Ga0213863_10000531

Overview

Basic Information

• Taxon OID: 3300021371
• Scaffold ID: Ga0213863_10000531
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO497
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29020
• Total Scaffold Genes: 69
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 55 (79.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046023	Metagenome / Metatranscriptome	152	N
F064101	Metagenome	129	N
F070576	Metagenome / Metatranscriptome	123	Y
F090871	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213863_1000053124	F064101	GGAGG	MNCDKEYEYEVIGYLLAKVDQETGEEVLNRHGDVKLFKHLDNNIDVLGFSEESVEEIPQ
Ga0213863_1000053140	F046023	GGAG	MAKGKEILKKNKDTWKEHSFIYDGYKFTMNYNKKDFNIAHELTGKIITKGNFKE
Ga0213863_1000053144	F090871	AGGA	MTKYTQDKYLEFATRAKEFIKKNPDASRSRVASYAGVSAGTLDKLAKSYEFNMPKALTPQQTRRASNWGTILGGLSKK
Ga0213863_100005317	F070576	AGGAG	MWSWHWICGCHFGFEWYQDMKMDDSKNKRYFEYFIIDVGCLRIQKCKQVENV