NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213863_10000220

Scaffold Ga0213863_10000220


Overview

Basic Information
Taxon OID3300021371 Open in IMG/M
Scaffold IDGa0213863_10000220 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO497
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)45059
Total Scaffold Genes60 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (35.00%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011354Metagenome / Metatranscriptome292Y
F032087Metagenome / Metatranscriptome181Y
F058510Metagenome / Metatranscriptome135N
F058511Metagenome / Metatranscriptome135N
F070056Metagenome / Metatranscriptome123N
F076587Metagenome / Metatranscriptome118N
F083373Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0213863_1000022010F083373N/AMSTHPFDTSTFASVKLKNVPSYLQSQAADHNLRVAAWFDNYAVNAAQFDAAMADQDKRWKMRTAEGWEADEGGWYTPTGISEHDWEHDYGNPFPEEPVWENYKALKRCTAGWRIDDTGWYSPDGQHESEWTGPLPEYTLL
Ga0213863_1000022012F032087GGAMLPMPPETGRQIVMKFLQYEIARANTADLLRAANFLEGAREIRRGCRKQRTKARKDQQTGWRKHVDQALLW
Ga0213863_1000022014F058511N/AMTRYALKTTDGAQVLYLAAYYANLPKNNGIRLTNKAKDACSYVTIEKACQVARMLEDSIGCVPSIVEVSY
Ga0213863_100002203F058510N/AMLSQETELSFKLSRYADSLPVEVCVTFAAADSNKRPFIEGTIISPSAQIYDRLNNPATSMRCYCHSDMPIQQQQETIASIEPGTTIRVLAQQPSTKYDNKAFGTLISSFNTFKSENKKLQLLTTGPAQKQTFTVSNMPADLVERMDAKLGDMDVKRTYFLKKLINKFLAGDFDDDFV
Ga0213863_1000022044F070056AGTAGMEYAYMGKSLEKVLKPDGSEVWELVELREAQPEPEVCKAVRKRKPSKPAEETPNTTFDF
Ga0213863_1000022047F011354N/AMGTRIISGFCTHLEVDSESRTTEASFAFMTPQDPEDFAGLMVRLASGIEVMIEVEDEDD
Ga0213863_100002207F076587N/AMAHAQLISYSYSRGSDILHVEAIVDDAVQVLPATQLDPPEFDSAHCEAVILWDEPLDHTNAPSREQVERMLPWITDWCAIPPITFDDD
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