Scaffold Ga0213863_10000176

Overview

Basic Information

• Taxon OID: 3300021371
• Scaffold ID: Ga0213863_10000176
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO497
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 49896
• Total Scaffold Genes: 71
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 59 (83.10%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001521	Metagenome / Metatranscriptome	679	Y
F003051	Metagenome / Metatranscriptome	510	Y
F003976	Metagenome / Metatranscriptome	459	Y
F005591	Metagenome / Metatranscriptome	395	Y
F010318	Metagenome / Metatranscriptome	305	Y
F010571	Metagenome	302	Y
F021404	Metagenome	219	Y
F031261	Metagenome	183	Y
F038195	Metagenome	166	Y
F083384	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213863_1000017612	F001521	GAGG	MTKLWITEHVNEDGAAIGPYIKAETVAEANRIAIQYGLLVLGEIQELEHEVKIKERVVH
Ga0213863_1000017657	F005591	GAGG	MNLYFKSTTLDKQIGWTWKDMDKAYWDTWIPKKSDIKIITRLNKEQKKQALDELWEDLQGAIQFTRDRNNARRRQKRLAQKEKV
Ga0213863_100001766	F083384	GGAGG	MKEETNKLTNFVIFKDNKRLEMIKDIYINGNAFSKMNVEQREKEKNKHKIHKDNYVSVNVLSEHMFIREGK
Ga0213863_1000017660	F003051	GAGG	MKTKILKSKVVIDMSVSEYDTLFKYIGKLDSMLNTLHETNDLWLSDVHNLSSLKWELIEMLDAEWNPDTYRYVKRGNK
Ga0213863_1000017664	F010318	AGGAGG	MNVDSDKPKYIECIYEAPITFDLEELGIDWDNVKDYYIKYGTLYVEFKDGSSEEYEGEQGETDWKWSAQENILTKDWYLVEGLN
Ga0213863_1000017665	F031261	AGGA	MTRTKNYVMTVDKNSDNILEQLNKLQQVRQSVSLLNKHSTRKHYVKCQGRWGRNNPDYNRRTIPFCPLDKAVKWDVYIYQGGR
Ga0213863_1000017668	F003976	GGAGG	MSRLYNDYYFEKQDILDTLDKLEMSVRFLNVWVNEPMGLENARYVLEKNANQEFNWFSRDMVKELLEEELR
Ga0213863_1000017669	F010571	AGGAGG	MSMNTRQAIYIENLYEGFYEKHYKELSKTSDDVERIEQEASRLAEIDLDNFEMEG
Ga0213863_1000017671	F038195	N/A	MVEVIYMRQDSKMKLHKDFYEYKTIPFTYFKKVANKHDFKKEWVSVRCQEDIMKQQPHNVEIRRLKRNV
Ga0213863_100001769	F021404	AGGGGG	MTYKINDKIDYFFKGDEDNEPCEDVMIVKALKDLDNDEVFKLKPTANNNNVLVKGDYDRSTGKYWATKWHDMNNETLKDGNTLVFTGFIF