NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213863_10000145

Scaffold Ga0213863_10000145


Overview

Basic Information
Taxon OID3300021371 Open in IMG/M
Scaffold IDGa0213863_10000145 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO497
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)55733
Total Scaffold Genes67 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (40.30%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006827Metagenome364Y
F018644Metagenome234Y
F061785Metagenome131N

Sequences

Protein IDFamilyRBSSequence
Ga0213863_1000014513F018644N/AMIEYILNNYKNDLMAMTFTYIGIVSIILMFLPKNNILSKIFREFASIFTSIFKK
Ga0213863_100001454F061785GGAGGMEETLQRLSVGIFGWIATDTIQNVDLMLGVVSKFVLITLTVLSIYKLWKELK
Ga0213863_100001455F006827N/AMSEEEITINYLVYETLDDAIARADTEGARRGYAYHRVGSGTRYRTYPQETADAKFALVVDGYELTEDEESAITNSVTFPEAEGI

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