Scaffold Ga0213863_10000145

Overview

Basic Information

• Taxon OID: 3300021371
• Scaffold ID: Ga0213863_10000145
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO497
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 55733
• Total Scaffold Genes: 67
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (40.30%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006827	Metagenome	364	Y
F018644	Metagenome	234	Y
F061785	Metagenome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213863_1000014513	F018644	N/A	MIEYILNNYKNDLMAMTFTYIGIVSIILMFLPKNNILSKIFREFASIFTSIFKK
Ga0213863_100001454	F061785	GGAGG	MEETLQRLSVGIFGWIATDTIQNVDLMLGVVSKFVLITLTVLSIYKLWKELK
Ga0213863_100001455	F006827	N/A	MSEEEITINYLVYETLDDAIARADTEGARRGYAYHRVGSGTRYRTYPQETADAKFALVVDGYELTEDEESAITNSVTFPEAEGI