Scaffold Ga0213860_10194900

Overview

Basic Information

• Taxon OID: 3300021368
• Scaffold ID: Ga0213860_10194900
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO550
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 892
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048640	Metagenome	148	N
F053978	Metagenome	140	Y
F055654	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213860_101949003	F055654	GAG	MEIIIDAPNKELAKALADRLSKDTGVARDKFKEVTDEVVDTNTSNTG
Ga0213860_101949004	F048640	AGGAG	MQPKGLHAHARIKFKPTRIQKQLECRLFGKTFRSVAEAARYYGLSASTAYEYHHERLHRETFPNRKRWNKWK
Ga0213860_101949005	F053978	N/A	KQIIREVVVELFKEVASKQTFGVSDDVLQLDEHLHDWVGAKIDKYKVNVYGATLEERY