Scaffold Ga0213860_10154947

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0213860_10154947

Scaffold Ga0213860_10154947

Overview

Basic Information
Taxon OID	3300021368 Open in IMG/M
Scaffold ID	Ga0213860_10154947 Open in IMG/M
Source Dataset Name	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO550
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1009
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location Name	USA: North Carolina
Coordinates	Lat. (^o)	34.7181	Long. (^o)	-76.6707	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F047994	Metagenome	149	Y
F063691	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213860_101549472	F047994	AGGAG	MSHPMNDQIFDVINDEWTDMSIEDLKDWLKTHRETDMVAKVVHDNLDSLEEKWKQEKLDSYPHC
Ga0213860_101549474	F063691	AGGAG	MSGEIYQCWSCKSVLHDSELMKTEYGKDCPLCCTDNLVNVDDLPEDREDR

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